from __future__ import annotations
__author__ = 'github.com/arm61'
from numbers import Number
from typing import Union
import numpy as np
import yaml
from easyscience.Objects.ObjectClasses import BaseObj
from easyscience.Objects.ObjectClasses import Parameter
from easyreflectometry.parameter_utils import get_as_parameter
from easyreflectometry.sample import BaseAssembly
from easyreflectometry.sample import Layer
from easyreflectometry.sample import LayerCollection
from easyreflectometry.sample import Sample
from .resolution_functions import PercentageFhwm
from .resolution_functions import ResolutionFunction
DEFAULTS = {
'scale': {
'description': 'Scaling of the reflectomety profile',
'url': 'https://github.com/reflectivity/edu_outreach/blob/master/refl_maths/paper.tex',
'value': 1.0,
'min': 0,
'max': np.Inf,
'fixed': True,
},
'background': {
'description': 'Linear background to include in reflectometry data',
'url': 'https://github.com/reflectivity/edu_outreach/blob/master/refl_maths/paper.tex',
'value': 1e-8,
'min': 0.0,
'max': np.Inf,
'fixed': True,
},
'resolution': {
'value': 5.0,
},
}
[docs]
class Model(BaseObj):
"""Model is the class that represents the experiment.
It is used to store the information about the experiment and to perform the calculations.
"""
# Added in super().__init__
name: str
sample: Sample
scale: Parameter
background: Parameter
[docs]
def __init__(
self,
sample: Union[Sample, None] = None,
scale: Union[Parameter, Number, None] = None,
background: Union[Parameter, Number, None] = None,
resolution_function: Union[ResolutionFunction, None] = None,
name: str = 'EasyModel',
interface=None,
):
"""Constructor.
:param sample: The sample being modelled.
:param scale: Scaling factor of profile.
:param background: Linear background magnitude.
:param name: Name of the model, defaults to 'EasyModel'.
:param resolution_function: Resolution function, defaults to PercentageFhwm.
:param interface: Calculator interface, defaults to `None`.
"""
if sample is None:
sample = Sample(interface=interface)
if resolution_function is None:
resolution_function = PercentageFhwm(DEFAULTS['resolution']['value'])
scale = get_as_parameter('scale', scale, DEFAULTS)
background = get_as_parameter('background', background, DEFAULTS)
super().__init__(
name=name,
sample=sample,
scale=scale,
background=background,
)
self.resolution_function = resolution_function
# Must be set after resolution function
self.interface = interface
[docs]
def add_item(self, *assemblies: list[BaseAssembly]) -> None:
"""Add a layer or item to the model sample.
:param assemblies: Assemblies to add to model sample.
"""
for arg in assemblies:
if issubclass(arg.__class__, BaseAssembly):
self.sample.append(arg)
if self.interface is not None:
self.interface().add_item_to_model(arg.uid, self.uid)
else:
raise ValueError(f'Object {arg} is not a valid type, must be a child of BaseAssembly.')
[docs]
def duplicate_item(self, idx: int) -> None:
"""Duplicate a given item or layer in a sample.
:param idx: Index of the item or layer to duplicate
"""
to_duplicate = self.sample[idx]
duplicate_layers = []
for i in to_duplicate.layers:
duplicate_layers.append(
Layer(
material=i.material,
thickness=i.thickness.raw_value,
roughness=i.roughness.raw_value,
name=i.name + ' duplicate',
interface=i.interface,
)
)
duplicate = to_duplicate.__class__(
LayerCollection(*duplicate_layers, name=to_duplicate.layers.name + ' duplicate'),
name=to_duplicate.name + ' duplicate',
)
self.add_item(duplicate)
[docs]
def remove_item(self, idx: int) -> None:
"""Remove an item from the model.
:param idx: Index of the item to remove.
"""
if self.interface is not None:
self.interface().remove_item_from_model(self.sample[idx].uid, self.uid)
del self.sample[idx]
@property
def resolution_function(self) -> ResolutionFunction:
"""Return the resolution function."""
return self._resolution_function
@resolution_function.setter
def resolution_function(self, resolution_function: ResolutionFunction) -> None:
"""Set the resolution function for the model."""
self._resolution_function = resolution_function
if self.interface is not None:
self.interface().set_resolution_function(self._resolution_function)
@property
def interface(self):
"""
Get the current interface of the object
"""
return self._interface
@interface.setter
def interface(self, new_interface) -> None:
"""Set the interface for the model."""
# From super class
self._interface = new_interface
if new_interface is not None:
self.generate_bindings()
self._interface().set_resolution_function(self._resolution_function)
@property
def uid(self) -> int:
"""Return a UID from the borg map."""
return self._borg.map.convert_id_to_key(self)
# Representation
@property
def _dict_repr(self) -> dict[str, dict[str, str]]:
"""A simplified dict representation."""
if isinstance(self._resolution_function, PercentageFhwm):
resolution_value = self._resolution_function.as_dict()['constant']
resolution = f'{resolution_value} %'
else:
resolution = 'function of Q'
return {
self.name: {
'scale': self.scale.raw_value,
'background': self.background.raw_value,
'resolution': resolution,
'sample': self.sample._dict_repr,
}
}
def __repr__(self) -> str:
"""String representation of the layer."""
return yaml.dump(self._dict_repr, sort_keys=False)
[docs]
def as_dict(self, skip: list = None) -> dict:
"""Produces a cleaned dict using a custom as_dict method to skip necessary things.
The resulting dict matches the parameters in __init__
:param skip: List of keys to skip, defaults to `None`.
"""
if skip is None:
skip = []
this_dict = super().as_dict(skip=skip)
this_dict['sample'] = self.sample.as_dict(skip=skip)
this_dict['resolution_function'] = self.resolution_function.as_dict()
return this_dict
[docs]
@classmethod
def from_dict(cls, this_dict: dict) -> Model:
"""
Create a Model from a dictionary.
:param this_dict: dictionary of the Model
:return: Model
"""
resolution_function = ResolutionFunction.from_dict(this_dict['resolution_function'])
del this_dict['resolution_function']
sample = Sample.from_dict(this_dict['sample'])
del this_dict['sample']
model = super().from_dict(this_dict)
model.sample = sample
model.resolution_function = resolution_function
return model
